circTools: identify and annotate circRNAs and their interactions with microRNAs (miRNAs) from large-scale <strong>CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH)</strong> and RNA-seq data.
Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis | Nature Protocols
Seq and CLIP through the miRNA world | Genome Biology | Full Text